The Cordilleran flycatcher was recently designated a species distinct from the Pacific-slope flycatcher with which it was formerly lumped under the name Western flycatcher. The two species are almost identical in appearance, and the population in eastern Oregon is in some respects vocally intermediate between the Cordilleran and Pacific-slope types, so the distribution and status of the Cordilleran n Oregon is unclear.
This species generally occurs in drier, higher elevation forests than the Pacific-slope flycatcher and is more closely associated with riparian zones.